FastQCFastQC Report
Mon 11 Dec 2017
WSB-F-ATAC-2-15_TGGATCTG_L007_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameWSB-F-ATAC-2-15_TGGATCTG_L007_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14109506
Sequences flagged as poor quality0
Sequence length126
%GC46

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATCC106950.020.140999120
TCGCCGG64750.019.738184120
CCGACGG33750.019.200712120
TAGGACG64950.018.847974
TCTCGGG51850.018.515635120
GTCCTAC87750.018.1222571
CGGTGGG62950.016.775843120
CGCCGTT21950.016.40152120
GACGAGG66300.016.018694120
CGTACGT12750.016.00110434
GGACGTG75250.015.7866746
TTGACGA41300.015.68932160
AGGACGT85300.015.475265
CGTCTAG17800.015.1707141
TACGCGT20700.014.7830525
TAGACCG17950.014.709634
CGACTTG41350.014.65493864
GTAGGAC95450.014.3341673
CCGTACG13550.014.17077133
CGTACGG13150.014.14375838
Produced by FastQC (version 0.11.2)