Basic Statistics
Measure | Value |
---|---|
Filename | PWK-M-frozen-3-library_ACCACTGT_L004_R1_001.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10464688 |
Sequences flagged as poor quality | 0 |
Sequence length | 126 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACACCACTGTATCTCGTATGCCGT | 11398 | 0.10891867965867688 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTCTAG | 1480 | 0.0 | 39.321175 | 1 |
TTGACGG | 1810 | 0.0 | 28.832369 | 31 |
TAGGACG | 4535 | 0.0 | 25.532194 | 4 |
GCGTTTA | 1350 | 0.0 | 23.105173 | 35 |
TGACGGC | 2350 | 0.0 | 22.717567 | 32 |
CGGCTAT | 2375 | 0.0 | 22.478434 | 35 |
CTACGGT | 1280 | 0.0 | 22.02517 | 13 |
GTATAGG | 4155 | 0.0 | 21.51452 | 1 |
GGACGTG | 5110 | 0.0 | 21.367945 | 6 |
GTAGGAC | 8005 | 0.0 | 21.210043 | 3 |
TAACGTT | 1215 | 0.0 | 20.737988 | 16 |
TACGGTG | 1420 | 0.0 | 20.701477 | 14 |
TATGGCG | 5680 | 0.0 | 20.279 | 16 |
TAGTGCG | 1335 | 0.0 | 20.21962 | 28 |
CGTCTAA | 1285 | 0.0 | 20.076212 | 1 |
TAGTCGA | 1675 | 0.0 | 20.05771 | 5 |
AATCACG | 3350 | 0.0 | 20.054739 | 34 |
CTAACGT | 1260 | 0.0 | 19.997347 | 15 |
TACGTAC | 635 | 0.0 | 19.840929 | 1 |
TCCGCAA | 1335 | 0.0 | 19.7702 | 33 |